Literature

Publications citing riboPOOLs

Characterization of an Entner-Doudoroff pathway-activated Escherichia coli

2022 | Kim | BMC Biotechnology for Biofuels and Bioproducts | Link

Translational readthrough of nonsense mutant TP53 by mRNA incorporation of 5-Fluorouridine

2022 | Palomar-Siles | Cell Death and Diseases | Link

Y RNAs are conserved endogenous RIG-I ligands across RNA virus infection and are targeted by HIV-1

2022 | Vabret | iScience

Nanopore sequencing of RNA and cDNA molecules in Escherichia coli

2022 | Gruenberger | RNA

Identification of small molecules that interfere with c-di-GMP signaling and induce dispersal of Pseudomonas aeruginosa biofilms

2021 | Andersen | Npj biofilms and microbiomes

Discerning the role of a functional arsenic-resistance cassette in the evolution and adaptation of a rice pathogen

2021 | Kaur | Microbial Genomics | Link

Molecular Connectivity between Extracytoplasmic Sigma Factors and PhoP Accounts for Coupled Mycobacterial Stress Response

2022 | Goar | Journal of Bacteriology

Comparative Analysis of rRNA Removal Methods for RNA-Seq Differential Expression in Halophilic Archaea

2022 | Martinez-Pastor | MDPI Biomolecules

Disentangling the lipid divide: Identification of key enzymes for the biosynthesis of membrane-spanning and ether lipids in Bacteria

2022 | Sahonero-Canavesi | Science Advances

Mystery of fatal 'staggering disease' unravelled: novel rustrela virus causes severe meningoencephalomyelitis in domestic cats

2023 | Matiasek | Nature Communications

Differential regulation of mRNA stability modulates transcriptional memory and facilitates environmental adaptation

2023 | Li | Nature Communications

Phenotypic and Transcriptomic Analyses of Seven Clinical Stenotrophomonas maltophilia Isolates Identify a Small Set of Shared and Commonly Regulated Genes Involved in the Biofilm Lifestyle

2020 | Alio | Applied and Environmental Microbiology

Systematic identification of molecular mediators of interspecies sensing in a community of two frequently coinfecting bacterial pathogens

2022 | Zarrella | PLOS Biology

Transcriptomic fingerprint of bacterial infection in lower extremity ulcers

2022 | Fritz | Journal of Pathology, Microbiology and Immunology

Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing

2022 | Begik | Nature Methods

Unraveling the small proteome of the plant symbiont Sinorhizobium meliloti by ribosome profiling and proteogenomics

2023 | Hadjeras | uLife | Link

Towards the characterization of the hidden world of small proteins in Staphylococcus aureus, a proteogenomics approach

2021 | Fuchs | PLOS Genetics

Isolation of a virus causing a chronic infection in the archaeal model organism Haloferax volcanii reveals antiviral activities of a provirus

2022 | Alarcon-Schumacher | PNAS

smORFer: a modular algorithm to detect small ORFs in prokaryotes.

2021 | Bartholomaus | Nucleic Acids Research

The de novo Purine Biosynthesis Pathway Is the Only Commonly Regulated Cellular Pathway during Biofilm Formation in TSB-Based Medium in Staphylococcus aureus and Enterococcus faecalis

2021 | Gelinas | Microbiology Spectrum

Non-target RNA depletion strategy to improve sensitivity of next-generation sequencing for the detection of RNA viruses in poultry

2022 | Parris | Journal of Veterinary Diagnostic Investigation

The Mammalian Cap-Specific m6Am RNA Methyltransferase PCIF1 Regulates Transcript Levels in Mouse Tissues

2022 | Pandey | Cell Reports

Channel nuclear pore complex subunits are required for transposon silencing in Drosophila

2021 | Munafo | eLife

Enhancer transcription detected in the nascent transcriptomic landscape of bread wheat

2022 | Xie | Genome Biology

Identification of D-arabinan-degrading enzymes in mycobacteria

2023 | Al-jourani | Nature Communications

FLEP-seq simultaneous detection of RNA polymerase II position, splicing status, polyadenylation site and poly(A) tail length at genome-wide scale by single-molecule nascent RNA sequencing

2021 | Long | Nature Protocols

Mechanisms of readthrough mitigation reveal principles of GCN1-mediated translational quality control

2023 | Mueller | Cell

Transcriptome profiling of Nudix hydrolase gene deletions in the thermoacidophilic archaeon Sulfolobus acidocaldarius

2023 | Breuer | Frontiers in Microbiology

A transposon expression burst accompanies the activation of Y-chromosome fertility genes during Drosophila spermatogenesis

2021 | Lawlor | Nature Communications

Exploring engineered vesiculation by Pseudomonas putida KT2440 for natural product biosynthesis

2023 | Bitzenhofer | Microbial Biotechnology | Link

Benzene Amide Ether Scaffold is Active against Non-replicating and Intracellular Mycobacterium tuberculosis

2023 | Ahmed | ACS Infectious Diseases | Link

Coupling of co-transcriptional splicing and 3’ end Pol II pausing during termination in Arabidopsis

2023 | Zhou | Genome Biology | Link

Macrophage-derived insulin antagonist ImpL2 induces lipoprotein mobilization uponbacterial infection

2023 | Krejcova | EMBO | Link

Systematic discovery of neoepitope–HLA pairs for neoantigens shared among patients and tumor types

2023 | Gurung | Nature Biotech | Link

The DEAD-box RNA helicase RhlB is required for efficient RNA processing at low temperature in Caulobacter

2023 | De araujo | Microbiology Spectrum | Link