Literature

Publications citing riboPOOLs

Efficient suppression of premature termination codons with alanine by engineered chimeric pyrrolysine tRNAs

2024 | Awawdeh | Nucleic Acids Research | Link

Comprehensive virome profiling of sugarcane and simplified duplex OneStep RT-PCR assay reveals the prevalence of sugarcane streak mosaic virus along with sugarcane yellow leaf virus in India

2024 | Srivastava | Journal of Genetic Engineering and Biotechnology | Link

Rewiring of RNA methylation by the oncometabolite fumarate in renal cell carcinoma

2024 | Fitzsimmons | NAR Cancer | Link

IGF2BP1 phosphorylation in the disordered linkers regulates ribonucleoprotein condensate formation and RNA metabolism

2024 | Hornegger | Nature Communications | Link

Unveiling the novel regulatory roles of RpoD-family sigma factors in Salmonella Typhimurium heat shock response through systems biology approaches

2024 | Park | PLOS Genetics | Link

Uncovering the small proteome of Methanosarcina mazei using Ribo-seq and peptidomics under different nitrogen conditions

2024 | Tufail | Nature Communications | Link

Impact of nutrient excess on physiology and metabolism of Sulfolobus acidocaldarius

2024 | Sedlmayr | Frontiers in Microbiology | Link

Assessing the de novo assemblers: a metaviromic study of apple and first report of citrus concave gum-associated virus, apple rubbery wood virus 1 and 2 infecting apple in India

2024 | Khan | BMC Genomics | Link

The RNA landscape of the human commensal Segatella copri reveals a small RNA essential for gut colonization

2024 | El mouali | Cell Host & Microbe | Link

The Neo-Open Reading Frame Peptides That Comprise the Tumor Framome Are a Rich Source of Neoantigens for Cancer Immunotherapy

2024 | Martin | Cancer Immunology Research | Link

Understanding the dissemination of viruses and viroids identified through virome analysis of major grapevine rootstocks and RPA-based detection of prevalent grapevine virus B

2024 | Thapa | Scientia Horticulturae | Link

piRNA generation is associated with the pioneer round of translation in stem cells

2024 | Parambil | Nucleic Acids Research | Link

Comprehensive map of ribosomal 2′-O-methylation and C/D box snoRNAs in Drosophila melanogaster

2024 | Sklias | Nucleic Acids Research | Link

A kinetic dichotomy between mitochondrial and nuclear gene expression processes

2024 | Mcshane | Molecular Cell | Link

Universal microbial reworking of dissolved organic matter along environmental gradients

2024 | Freeman | Nature Communications | Link

Translation variation across genetic backgrounds reveals a post-transcriptional buffering signature in yeast

2024 | Teyssonniere | Nucleic Acids Research | Link

RNA-sequencing of paired tape-strips and skin biopsies in atopic dermatitis reveals key differences

2024 | Fritz | Allergy | Link

Mettl1-dependent m7G tRNA modification is essential for maintaining spermatogenesis and fertility in Drosophila melanogaster

2024 | Kaneko | Nature Communications | Link

Alternative translation initiation produces synaptic organizer proteoforms with distinct localization and functions

2024 | Lee | Molecular Cell | Link

A mycofactocin-associated dehydrogenase is essential for ethylene glycol metabolism by Rhodococcus jostii RHA1

2024 | Shimizu | Environmental Biotechnology | Link

Erythritol alters phosphotransferase gene expression and inhibits the in vitro growth of Staphylococcus coagulans isolated from canines with pyoderma

2024 | Onishi-sakamoto | Frontiers in Veterinary Science | Link

Systematic identification of post-transcriptional regulatory modules

2024 | M khoroshkin | Nature Communications | Link

mRNA cap-binding protein eIF4E1 is a novel regulator of Toxoplasma gondii latency

2024 | Holmes | mBio

Translational Regulation of Duplicated Gene Expression Evolution in Allopolyploid Cotton

2024 | Fu | Genes | Link

Dynamics of diversified A-to-I editing in Streptococcus pyogenes is governed by changes in mRNA stability

2024 | Wulff | Nucleic Acids Research | Link

Current limitations in predicting mRNA translation with deep learning models

2024 | Schlusser | Genome Biology | Link

Methyltransferase ATMETTL5 writes m6A on 18S ribosomal RNA to regulate translation in Arabidopsis

2024 | Song | New Phytologist | Link

Uridylation regulates mRNA decay directionality in fission yeast

2024 | Grochowski | Nature Communications | Link

Vaginal Lactobacillus fatty acid response mechanisms reveal a metabolite-targeted strategy for bacterial vaginosis treatment

2024 | Zhu | Cell | Link

Optimization of ribosome profiling in plants including structural analysis of rRNA fragments

2024 | Ting | Plant Methods | Link

Calibrated ribosome profiling assesses the dynamics of ribosomal flux on transcripts

2024 | Tomuro | Nature Communications | Link

m3C32 tRNA modification controls serine codon-biased mRNA translation, cell cycle, and DNA-damage response

2024 | Cui | Nature Communications

Detection of novel orthoparamyxoviruses, orthonairoviruses and an orthohepevirus in European white-toothed shrews

2024 | Haring | Microbial Genomics | Link

Transcriptome Analysis of Sake Yeast in Co-Culture with kuratsuki Kocuria

2024 | Kobayashi | MDPI Fermentation | Link

OsALKBH9-mediated m6 A demethylation regulates tapetal PCD and pollen exine accumulation in rice

2024 | Tang | Plant Biotechnology Journal | Link

Transcriptomic profiling of haloarchaeal denitrification through RNA-Seq analysis

2024 | Miralles-robledillo | Applied and Environmental Microbiology | Link

Widespread alterations in systemic immune profile are linked to lung function heterogeneity and airway microbes in cystic fibrosis

2024 | Rosii | Journal of Cystic Fibrosis | Link

Algal methylated compounds shorten the lag phase of Phaeobacter inhibens bacteria

2024 | Sperfeld | Nature Microbiology | Link

Selective gene expression maintains human tRNA anticodon pools during differentiation

2024 | Gao | Nature cell biology | Link

An expanded transcriptome atlas for Bacteroides thetaiotaomicron reveals a small RNA that modulates tetracycline sensitivity

2024 | Ryan | Nature Microbiology | Link

Inhibition of mevalonate pathway by macrophage-specific delivery of atorvastatin prevents their pro-inflammatory polarisation

2024 | Krejcova | Insect Molecular Biology | Link

Chp1 is a dedicated chaperone at the ribosome that safeguards eEF1A biogenesis

2024 | Minoia | Nature Communications | Link

Cbp1 and Cren7 form chromatin-like structures that ensure efficient transcription of long CRISPR arrays

2024 | Blombach | Nature Communications | Link

Molecular and Serological Detection of Bovine Coronaviruses in Marmots (Marmota marmota) in the Alpine Region

2024 | Moreno | MDPI Viruses | Link

Biosynthesis and differential spatial distribution of the 3-deoxyanthocyanidins apigenidin and luteolinidin at the interface of a plant‐cyanobacteria symbiosis exposed to cold

2024 | Gungor | Plant, Cell & Environment | Link

TbsP and TrmB jointly regulate gapII to influence cell development phenotypes in the archaeon Haloferax volcanii

2024 | Hackley | Molecular Microbiology | Link

PABP-driven secondary condensed phase within RSV inclusion bodies activates viral mRNAs for ribosomal recruitment

2024 | Zhang | Virologica Sinica | Link

Impact of eIF2a phosphorylation on the translational landscape of mouse embryonic stem cells

2024 | Amiri | Cell Reports | Link

Genome analysis of viruses of Phenuiviridae, Betaflexiviridae and Bromoviridae, and apple scar skin viroid in pear by high-throughput sequencing revealing host expansion of a rubodvirus and an ilarvirus

2024 | Khan | Physiological and Molecular Plant Pathology | Link

Growth of the Nitrosomonas europaea cells in the biofilm and planktonic growth mode: Responses of extracellular polymeric substances production and transcriptome

2023 | Oshiki | Journal of Bioscience and Bioengineering | Link

Uncovering the temporal dynamics and regulatory networks of thermal stress response in a hyperthermophile using transcriptomics and proteomics

2023 | Gruenberger | mBio | Link

Methylated guanosine and uridine modifications in S. cerevisiae mRNAs modulate translation elongation

2023 | Jones | RSC Chemical Biology | Link

Paf1 complex subunit Rtf1 stimulates H2B ubiquitylation by interacting with the highly conserved N-terminal helix of Rad6

2023 | Fetian | PNAS | Link

Human mRNA in saliva can correctly identify individuals harboring acute infection

2023 | Yang | Host-Microbial Interactions | Link

Functioning of a tripartite lignocellulolytic microbial consortium cultivated under two shaking conditions: a metatranscriptomic study

2023 | Wang | Biotechnology for Biofuels and Bioproducts | Link

Bacteria use a catabolic patchwork pathway of apparently recent origin for degradation of the synthetic buffer compound TRIS

2023 | Holert | The ISME Journal | Link

A conserved transcription factor controls gluconeogenesis via distinct targets in hypersaline-adapted archaea with diverse metabolic capabilities

2023 | Hackley | PLOS Genetics | Link

Overexpression of polyphosphate polymerases and deletion of polyphosphate phosphatases shorten the replicative lifespan in yeast

2023 | Umeda | FEBS Letters | Link

Nuclear mRNPs are compact particles packaged with a network of proteins promoting RNA

2023 | Bonneau f | Genes Dev | Link

Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus

2023 | Van lopik | Nature Communications | Link

Stress-induced nuclear speckle reorganization is linked to activation of immediate early gene splicing

2023 | Sung | Journal of Cell Biology | Link

Revealing the small proteome of Haloferax volcanii by combining ribosome profiling and small-protein optimized mass spectrometry

2023 | Hadjeras | microLife | Link

Aerobic bacteria produce nitric oxide via denitrification and promote algal population collapse

2023 | Abada | The ISME Journal | Link

Characterization of an archaeal virus-host system reveals massive genomic rearrangements in a laboratory strain

2023 | Mercier | Frontiers in Microbiology | Link

Syntrophic entanglements for propionate and acetate oxidation under thermophilic and high-ammonia conditions

2023 | Singh | The ISME Journal | Link

Central Role of Sibling Small RNAs NgncR_162 and NgncR_163 in Main Metabolic Pathways of Neisseria gonorrhoeae

2023 | Steiner | mBio | Link

ROS-induced ribosome impairment underlies ZAKa mediated metabolic decline in obesity and aging

2023 | Snieckute | Science | Link

Macrophage‐derived insulin antagonist ImpL2 induces lipoprotein mobilization upon bacterial infection

2023 | Krejcova | EMBO | Link

Acclimation of Nodularia spumigena CCY9414 to inorganic phosphate limitation

2023 | Santoro | Frontiers in Microbiology | Link

Rational design of alcoholic fermentation targeting extracellular carbon

2023 | Watanabe | npj Science of Food | Link

Battle for control of anthocyanin biosynthesis in two Brassicaceae species infected with turnip mosaic virus

2023 | Inukai | Journal of Experimental Botany | Link

Integrated workflow for discovery of microprotein-coding small open reading frames

2023 | Cao | STAR Protocols | Link

Depletion of tRNA CCA-adding enzyme in Mycobacterium tuberculosis leads to polyadenylation of transcripts and precursor tRNAs

2023 | Blaszczyk | Scientific Reports | Link

RNF14-dependent atypical ubiquitylation promotes translation-coupled resolution of RNA-protein crosslinks

2023 | Zhao | Molecular Cell | Link

Mystery of fatal 'staggering disease' unravelled: novel rustrela virus causes severe meningoencephalomyelitis in domestic cats

2023 | Matiasek | Nature Communications | Link

Differential regulation of mRNA stability modulates transcriptional memory and facilitates environmental adaptation

2023 | Li | Nature Communications | Link

Unraveling the small proteome of the plant symbiont Sinorhizobium meliloti by ribosome profiling and proteogenomics

2023 | Hadjeras | uLife | Link

Identification of D-arabinan-degrading enzymes in mycobacteria

2023 | Al-jourani | Nature Communications | Link

Mechanisms of readthrough mitigation reveal principles of GCN1-mediated translational quality control

2023 | Mueller | Cell | Link

Transcriptome profiling of Nudix hydrolase gene deletions in the thermoacidophilic archaeon Sulfolobus acidocaldarius

2023 | Breuer | Frontiers in Microbiology | Link

Exploring engineered vesiculation by Pseudomonas putida KT2440 for natural product biosynthesis

2023 | Bitzenhofer | Microbial Biotechnology | Link

Benzene Amide Ether Scaffold is Active against Non-replicating and Intracellular Mycobacterium tuberculosis

2023 | Ahmed | ACS Infectious Diseases | Link

Coupling of co-transcriptional splicing and 3

2023 | Zhou | Genome Biology | Link

Macrophage-derived insulin antagonist ImpL2 induces lipoprotein mobilization uponbacterial infection

2023 | Krejcova | EMBO | Link

Systematic discovery of neoepitope

2023 | Gurung | Nature Biotech | Link

The DEAD-box RNA helicase RhlB is required for efficient RNA processing at low temperature in Caulobacter

2023 | de Araujo | Microbiology Spectrum | Link

The carnitine degradation pathway of Acinetobacter baumannii and its role in virulence

2022 | Breisch | Environmental Microbiology | Link

Ribotype-dependent growth inhibition and promotion by erythritol in Cutibacterium acnes

2022 | Fujii | Journal of Cosmetic Dermatology | Link

The novel protein ScrA acts through the SaeRS two-component system to regulate virulence gene expression in Staphylococcus aureus

2022 | Wittekind | Molecular Microbiology | Link

Mechanisms behind the varying severity of Aleutian mink disease virus: Comparison of three farms with a different disease status

2022 | Virtanen | Veterinary Microbiology | Link

Global transcriptional and circadian regulation in a halotolerant cyanobacterium Halothece sp. PCC7418

2022 | Waditee-sirisattha | Scientific Reports | Link

Sex-specific variation in R-loop formation in Drosophila melanogaster

2022 | Stanek | PLOS Genetics | Link

A simple and robust method for isolating and analyzing chromatin-bound RNAs in Arabidopsis

2022 | Zhang | Plant Methods | Link

Opportunities and Challenges to Profile mRNA Modifications in Escherichia coli

2022 | Petrov | ChemBioChem | Link

Sensing of individual stalled 80S ribosomes by Fap1 for nonfunctional rRNA turnover

2022 | Li | Molecular Cell | Link

Metatranscriptomics of cheese microbial communities: Efficiency of RNA extraction from various cheese types and of mRNA enrichment

2022 | Carbonne | International Journal of Food Microbiology | Link

An atlas of plant full-length RNA reveals tissue-specific and monocots

2022 | Jia | Nature Plants | Link

Multi-site fungicides suppress banana Panama disease, caused by Fusarium oxysporum f. sp. cubense Tropical Race 4

2022 | Cannon | Plos Pathogens | Link

Characterization of an Entner-Doudoroff pathway-activated Escherichia coli

2022 | Kim | BMC Biotechnology for Biofuels and Bioproducts | Link

Translational readthrough of nonsense mutant TP53 by mRNA incorporation of 5-Fluorouridine

2022 | Palomar-Siles | Cell Death and Diseases | Link

Y RNAs are conserved endogenous RIG-I ligands across RNA virus infection and are targeted by HIV-1

2022 | Vabret | iScience | Link

Nanopore sequencing of RNA and cDNA molecules in Escherichia coli

2022 | Gruenberger | RNA | Link

Molecular Connectivity between Extracytoplasmic Sigma Factors and PhoP Accounts for Coupled Mycobacterial Stress Response

2022 | Goar | Journal of Bacteriology | Link

Comparative Analysis of rRNA Removal Methods for RNA-Seq Differential Expression in Halophilic Archaea

2022 | Martinez-Pastor | MDPI Biomolecules | Link

Disentangling the lipid divide: Identification of key enzymes for the biosynthesis of membrane-spanning and ether lipids in Bacteria

2022 | Sahonero-Canavesi | Science Advances | Link

Systematic identification of molecular mediators of interspecies sensing in a community of two frequently coinfecting bacterial pathogens

2022 | Zarrella | PLOS Biology | Link

Transcriptomic fingerprint of bacterial infection in lower extremity ulcers

2022 | Blaine | Journal of Pathology, Microbiology and Immunology | Link

Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing

2022 | Begik | Nature Methods | Link

Isolation of a virus causing a chronic infection in the archaeal model organism Haloferax volcanii reveals antiviral activities of a provirus

2022 | Alarcon-Schumacher | PNAS | Link

Non-target RNA depletion strategy to improve sensitivity of next-generation sequencing for the detection of RNA viruses in poultry

2022 | Parris | Journal of Veterinary Diagnostic Investigation | Link

The Mammalian Cap-Specific m6Am RNA Methyltransferase PCIF1 Regulates Transcript Levels in Mouse Tissues

2022 | Pandey | Cell Reports | Link

Enhancer transcription detected in the nascent transcriptomic landscape of bread wheat

2022 | Xie | Genome Biology | Link

Dual functioning by the PhoR sensor is a key determinant to Mycobacterium tuberculosis virulence

2021 | Singh | PLOS Genetics | Link

A Cas12a-based CRISPR interference system for multigene regulation in mycobacteria

2021 | Fleck | Journal of Biological Chemistry | Link

Compensatory evolution of Pseudomonas aeruginosa

2021 | La rosa | Nature Communications | Link

A versatile genetic toolbox for Prevotella copri enables studying polysaccharide utilization systems

2021 | Li | EMBO | Link

Landscape of transcription termination in Arabidopsis revealed by single-molecule nascent RNA sequencing

2021 | Mo | Genome Biology | Link

Revealing nascent RNA processing dynamics with nano-COP

2021 | Drexler | Nature Protocols | Link

Neuronal Nsun2 deficiency produces tRNA epitranscriptomic alterations and proteomic shifts impacting synaptic signaling and behavior

2021 | Blaze | Nature Communications | Link

Cotranscriptional and Posttranscriptional Features of the Transcriptome in Soybean Shoot Apex and Leaf

2021 | Zhu | Frontiers in Plant Science | Link

Enhanced production of nonanedioic acid from nonanoic acid by engineered

2021 | Lee | Biotechnology Journal | Link

Experimental and Computational Workflow for RNA Sequencing in Mycobacterium tuberculosis : From Total RNA to Differentially Expressed Genes

2021 | Ma | Mycobacteria Protocols | Link

Quasi-essentiality of RNase Y in Bacillus subtilis is caused by its critical role in the control of mRNA homeostasis

2021 | Benda | Nucleic Acids Research | Link

Cysteine: an overlooked energy and carbon source

2021 | Goebbels | Scientific Reports | Link

Chromosome-level genome assembly and transcriptome-based annotation of the oleaginous yeast Rhodotorula toruloides CBS 14

2021 | Martin-hernandez | Genomics | Link

Identification of small molecules that interfere with c-di-GMP signaling and induce dispersal of Pseudomonas aeruginosa biofilms

2021 | Andersen | Npj biofilms and microbiomes | Link

Discerning the role of a functional arsenic-resistance cassette in the evolution and adaptation of a rice pathogen

2021 | Kaur | Microbial Genomics | Link

Towards the characterization of the hidden world of small proteins in Staphylococcus aureus, a proteogenomics approach

2021 | Fuchs | PLOS Genetics | Link

smORFer: a modular algorithm to detect small ORFs in prokaryotes.

2021 | Bartholomaus | Nucleic Acids Research | Link

The de novo Purine Biosynthesis Pathway Is the Only Commonly Regulated Cellular Pathway during Biofilm Formation in TSB-Based Medium in Staphylococcus aureus and Enterococcus faecalis

2021 | Gelinas | Microbiology Spectrum | Link

Channel nuclear pore complex subunits are required for transposon silencing in Drosophila

2021 | Munafo | eLife | Link

FLEP-seq simultaneous detection of RNA polymerase II position, splicing status, polyadenylation site and poly(A) tail length at genome-wide scale by single-molecule nascent RNA sequencing

2021 | Long | Nature Protocols | Link

A transposon expression burst accompanies the activation of Y-chromosome fertility genes during Drosophila spermatogenesis

2021 | Lawlor | Nature Communications | Link

A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence

2020 | Venturini | microLife | Link

A high-resolution transcriptome map identifies small RNA regulation of metabolism in the gut microbe Bacteroides thetaiotaomicron

2020 | Ryan | Nature Communications | Link

Bifidobacterium infantis Metabolizes 2'Fucosyllactose-Derived and Free Fucose Through a Common Catabolic Pathway Resulting in 1,2-Propanediol Secretion

2020 | Dedon | Frontiers in Nutrition | Link

Coxiella burnetii replicates in Galleria mellonella hemocytes and transcriptome mapping reveals in vivo regulated genes

2020 | Kovacs-simon | Virulence | Link

Phenotypic and Transcriptomic Analyses of Seven Clinical Stenotrophomonas maltophilia Isolates Identify a Small Set of Shared and Commonly Regulated Genes Involved in the Biofilm Lifestyle

2020 | Alio | Applied and Environmental Microbiology | Link

Deconstructing and Reconstructing Cheese Rind Microbiomes for Experiments in Microbial Ecology and Evolution

2019 | Cosetta | Current Protocols in Microbiology | Link