Pan-Actinobacteria
rRNA depletion kits
Efficient ribodepletion for Actinobacteria
The Pan-Actinobacteria riboPOOL is designed to efficiently remove ribosomal RNA (rRNA) from Actinobacteria RNA samples. The product is compatible with most downstream applications, including different next generation sequencing workflows (both short and long-read sequencing).
Available riboPOOL products and their recommended applications:
| Product | Input RNA Quality | Input RNA | Application |
|---|---|---|---|
| Pan riboPOOL | High Quality (RIN>7) | 10 ng- 3 µg | Standard RNA-seq |
| Pan High Input riboPOOL | High Quality (RIN>7) | 5 µg - 30 µg | Standard RNA-seq |
Actinobacteria are renowned for their significant contributions to medicine and biotechnology, as they are prolific producers of antibiotics and various bioactive compounds.
Shop riboPOOLs by application
Pan riboPOOL
rRNA depletion for multiple species
High Input
Pan riboPOOL for large RNA quantities
Sequences covered by Pan-Actinobacteria riboPOOLs
| Sequence | Type | Pan | High Input |
|---|---|---|---|
| 23S rRNA | Cytoplasmic | ✓ | ✓ |
| 16S rRNA | Cytoplasmic | ✓ | ✓ |
| 5S rRNA | Cytoplasmic | ✓ | ✓ |
Pan-Actinobacteria Taxonomic Coverage
The Pan-Actinobacteria riboPOOL was designed using the rRNA sequences from these species as templates:
Actinoplanes teichomyceticus
Amycolatopsis australiensis
Frankia alni
Kibdelosporangium phytohabitans
Kuteria albida
Lechevalieria atacamensis
Nonomuraea zeae
Saccharopolyspora erythraea
Saccharothrix espanaensis
Streptomyces coelicolor
The Pan-Actinobacteria riboPOOL is designed for efficient ribodepletion in phylum Actinobacteria (Actinomycetota). Pan-Actinobacteria riboPOOL probes have been mapped against rRNA sequences of almost 3000 Actinobacteria species to ensure uniform coverage across the phylum.
Would you like to know how well the Pan-Actinobacteria riboPOOL covers your Actinobacteria species of interest? Contact us for a free bioinformatic coverage assessment.
Not finding what you are looking for?
All of our riboPOOLs can be customized or combined with different species to provide individual solutions that fit your experiment. Contact us at info@sitools.de for more information.