Arabidopsis thaliana riboPOOL for ribosome profiling
The Arabidopsis thaliana Ribo-Seq riboPOOL is designed to efficiently remove ribosomal RNA (rRNA) from Arabidopsis thaliana during Ribo-Seq sample preparation.
Depletion with Ribo-Seq riboPOOLs can be readily integrated into Ribo-Seq workflows without the need of modifications to established protocols.
For high-quality and intact (RIN > 7) RNA samples, see Arabidopsis thaliana riboPOOL and for depletion of rRNA in FFPE/degraded sample, see Arabidopsis thaliana degraded RNA riboPOOL.
The Arabidopsis thaliana riboPOOL covers the following sequences:
| Sequence | Type | Covered |
|---|---|---|
| 25S rRNA | Cytosolic | Yes |
| 18S rRNA | Cytosolic | Yes |
| 5.8S rRNA | Cytosolic | Yes |
| 5S rRNA | Cytosolic | Yes |
| 26S rRNA | Mitochondrial | No |
| 18S rRNA | Mitochondrial | No |
| 5S rRNA | Mitochondrial | No |
| 23S rRNA | Plastid | Yes |
| 16S rRNA | Plastid | Yes |
| 5S rRNA | Plastid | Yes |
| 4.5S rRNA | Plastid | Yes |
Arabidopsis thaliana, a small flowering plant belonging to the mustard family, is a key model organism in plant biology research. Known for its short life cycle and small genome, Arabidopsis serves as a powerful model for investigating plant genetics, developmental biology, and responses to environmental cues.
Benefits of using riboPOOLs for ribosome profiling
- Enhance the cost-efficiency of sequencing projects
- Facilitate the quantification of translation of rare transcripts
- Customizable rRNA removal solution for any species