Arabidopsis thaliana Ribo-Seq
rRNA depletion kit
Efficient ribodepletion in Arabidopsis thaliana
The Arabidopsis thaliana Ribo-Seq riboPOOL is designed to efficiently remove ribosomal RNA (rRNA) during Ribo-Seq experiments. It’s also fully compatible with total RNA-Seq samples, making it a versatile option for project including both Ribo-Seq and RNA-Seq.
Ribodepletion with riboPOOLs can be easily integrated into Ribo-Seq protocols without requiring modifications to established workflows.
If you're only working with total RNA-Seq check out our Arabidopsis thaliana riboPOOL (for intact RNA) and Arabidopsis thaliana intact/degraded RNA riboPOOL (for intact and degraded RNA).
The Arabidopsis thaliana Ribo-Seq riboPOOL covers the following sequences:
| Sequence | Type | Covered |
|---|---|---|
| 25S rRNA | Cytoplasmic | Yes |
| 18S rRNA | Cytoplasmic | Yes |
| 5.8S rRNA | Cytoplasmic | Yes |
| 5S rRNA | Cytoplasmic | Yes |
| 26S rRNA | Mitochondrial | No |
| 18S rRNA | Mitochondrial | No |
| 5S rRNA | Mitochondrial | No |
| 23S rRNA | Plastid | Yes |
| 16S rRNA | Plastid | Yes |
| 5S rRNA | Plastid | Yes |
| 4.5S rRNA | Plastid | Yes |
Arabidopsis thaliana, a small flowering plant belonging to the mustard family, is a key model organism in plant biology research. Known for its short life cycle and small genome, Arabidopsis serves as a powerful model for investigating plant genetics, developmental biology, and responses to environmental cues.
Benefits of using riboPOOLs for ribosome profiling
- Enhance the cost-efficiency of sequencing projects
- Facilitate the quantification of translation of rare transcripts
- Customizable rRNA removal solution for any species