Ectocarpus siliculosus riboPOOL for ribosome profiling
The Ectocarpus siliculosus Ribo-Seq riboPOOL is designed to efficiently remove ribosomal RNA (rRNA) from Ectocarpus siliculosus (brown algae) during Ribo-Seq sample preparation.
Depletion with Ribo-Seq riboPOOLs can be readily integrated into Ribo-Seq workflows without the need of modifications to established protocols.
The Ectocarpus siliculosus riboPOOL covers the following sequences:
| Sequence | Type | Covered |
|---|---|---|
| 28S rRNA | Cytosolic | Yes |
| 18S rRNA | Cytosolic | Yes |
| 5.8S rRNA | Cytosolic | Yes |
| 5S rRNA | Cytosolic | Yes |
| 16S rRNA | Mitochondrial | No |
| 12S rRNA | Mitochondrial | No |
Ectocarpus siliculosus, commonly known as the filamentous brown alga, is widely studied as a model organism in phycology. Its relatively simple structure, rapid growth, and close genetic relationship to other brown algae make it an excellent system for investigating marine plant physiology, developmental processes, and responses to environmental factors.
Benefits of using riboPOOLs for ribosome profiling
- Enhance the cost-efficiency of sequencing projects
- Facilitate the quantification of translation of rare transcripts
- Customizable rRNA removal solution for any species