Ectocarpus siliculosus Ribo-Seq
rRNA depletion kit
Efficient ribodepletion for Ectocarpus siliculosus
The Ectocarpus siliculosus Ribo-Seq riboPOOL is designed to efficiently remove ribosomal RNA (rRNA) during Ribo-Seq experiments. It’s also fully compatible with total RNA-Seq samples, making it a versatile option for project including both Ribo-Seq and RNA-Seq.
Ribodepletion with riboPOOLs can be easily integrated into Ribo-Seq protocols without requiring modifications to established workflows.
If you're only working with total RNA-Seq check out our Ectocarpus siliculosus intact and degraded RNA riboPOOL (for intact and degraded RNA).
The Ectocarpus siliculosus Ribo-Seq riboPOOL covers the following sequences:
| Sequence | Type | Covered |
|---|---|---|
| 28S rRNA | Cytoplasmic | Yes |
| 18S rRNA | Cytoplasmic | Yes |
| 5.8S rRNA | Cytoplasmic | Yes |
| 5S rRNA | Cytoplasmic | Yes |
| 16S rRNA | Mitochondrial | No |
| 12S rRNA | Mitochondrial | No |
Ectocarpus siliculosus, commonly known as the filamentous brown alga, is widely studied as a model organism in phycology. Its relatively simple structure, rapid growth, and close genetic relationship to other brown algae make it an excellent system for investigating marine plant physiology, developmental processes, and responses to environmental factors.
Benefits of using riboPOOLs for ribosome profiling
- Enhance the cost-efficiency of sequencing projects
- Facilitate the quantification of translation of rare transcripts
- Customizable rRNA removal solution for any species