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Literature
Publications citing riboPOOLs
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Important role in transcription start site selection for the RNA polymerase II–TFIIE–TFIIH interface in Saccharomyces cerevisiae
2026 | Basnet | Genetics | Link
Evaluation of RNA extraction and rRNA depletion protocols for RNA-Seq in eleven edible seaweed species from brown, red, and green algae
2026 | Dekker | PLOS ONE | Link
Global discovery of RNA modifications and functional analysis of m5C methylome in cyanobacteria
2026 | Cao | Journal of Biological Chemistry | Link
Versatile and Selective Biomolecule Pulldown with Combinatorial DNA-Crosslinked Polymers
2026 | Speed | Angewandte Chemie International Edition | Link
Disruption of methionine synthesis repressor makes Escherichia coli mutualistic to host stinkbug
2026 | Wang | mBio | Link
Genetic dissection of transcription start site selection by RNA polymerase II in Saccharomyces cerevisiae
2026 | Arora | Genetics | Link
Epitranscriptomic control of stress adaptations in Escherichia coli
2026 | Riquelme-barrios | Nucleic Acids Research | Link
METTL18 ensures pancreatic function by maintaining proper translation and proteostasis
2026 | Shimazu | Molecular Metabolism | Link
Stalled translation on transcripts cleaved by RNase L activates signaling important for innate immunity
2026 | Karasik | RNA | Link
Peak-calling Algorithms (WonderPeaks and PeakStream) as Tools for Improved ChIP-seq and Transcriptomic Analysis in Fungal Pathogens
2025 | Gause | Journal of Visualized Experiments | Link
Symbionts with eroded genomes adjust gene expression according to host life-stage and environment
2025 | Carvalho | EMBO reports | Link
Shared metabolism between a bacterial and fungal species that reside in the human gut
2025 | Gause | PNAS | Link
Protocol for Disome-seq to identify transcriptome-wide ribosome collisions in yeast cells
2025 | Ayres-galhardo | STAR Protocols | Link
Internal in-frame translation generates Cas11b, which is important for effective interference in an archaeal CRISPR-Cas system
2025 | Sailer | Frontiers in Microbiology | Link
A simple, fast, and cost-efficient protocol for ultra-sensitive ribosome profiling
2025 | Koubek | Nucleic Acids Research | Link
RNA m6A regulates the transcription and heterochromatin state of retrotransposons in Arabidopsis
2025 | Song | Nature Plants | Link
Long-term benefits of TUDCA supplement in ARSACS zebrafish model
2025 | Naef | Scientific Reports | Link
Structural properties of short-chain carboxylic acids and alcohols relate to the molecular and physiological response of Salmonella enterica in an acidic environment
2025 | Ng | Applied Microbiology and Biotechnology | Link
Rapid UPF1 depletion illuminates the temporal dynamics of the NMD-regulated human transcriptome
2025 | Boehm | Molecular Cell | Link
Discovery of a Pseudomonas aeruginosa-specific small molecule targeting outer membrane protein OprH-LPS interaction by a multiplexed screen
2025 | Poulsen | Cell Chemical Biology | Link
Carbon source, cell density, and the microbial community control inhibition of V. cholerae surface colonization by environmental nitrate
2025 | James | mBio | Link
Monitoring the complexity and dynamics of mitochondrial translation
2025 | Wakigawa | Molecular Cell | Link
Dual transcriptomic profiling of Staphylococcus aureus endocarditis in a porcine model reveals strong parallels with human infection
2025 | Garcia | mBio | Link
A U3 snoRNA is required for the regulation of chromatin dynamics and antiviral response in Drosophila melanogaster
2025 | Jain | Nucleic Acids Research | Link
A methyltransferase-independent role for METTL1 in tRNA aminoacylation and oncogenic transformation
2025 | Ali | Molecular Cell | Link
Comparative CRISPRi screens reveal a human stem cell dependence on mRNA translation-coupled quality control
2025 | Rodschinka | Nature Structural and Molecular Biology | Link
Phase 1/2 trial of encorafenib, cetuximab, and nivolumab in microsatellite stable BRAFV600E metastatic colorectal cancer
2025 | Morris | Cancer Cell | Link
Pre-mRNA processing factors differentially impact coordination between co-transcriptional cleavage and transcription termination
2025 | Jin | Nature Communications | Link
Cell type–specific purifying selection of synonymous mitochondrial DNA variation
2025 | Lareau | PNAS | Link
Multi-omic analysis reveals transkingdom gut dysbiosis in metabolic dysfunction-associated steatotic liver disease
2025 | Kim | Nature Metabolism | Link
Erythritol alters the expression of genes related to sugar and arginine metabolisms and suppresses the growth of Staphylococcus hyicus
2025 | Onishi-sakamoto | Veterinary Dermatology | Link
Parent-of-origin regulation by maternal auts2 shapes neurodevelopment and behavior in fish
2025 | Clement | Genome Biology | Link
Emergence of transferable daptomycin resistance in Gram-positive bacteria
2025 | Marciniak | npj antimicrobials and resistance | Link
Provirus deletion from Haloferax volcanii affects motility, stress resistance, and CRISPR RNA expression
2025 | Di cianni | microLife | Link
EIF3D safeguards the homeostasis of key signaling pathways in human primed pluripotency
2025 | Okubo | Science Advances | Link
Relationships between phytoplankton pigments and DNA- or RNA-based abundances support ecological applications
2025 | Lampe | Biogeosciences | Link
Rad53 regulates RNase H1, which promotes DNA replication through sites of transcription-replication conflict
2025 | Wagner | Cell Reports | Link
Nitrile rubber biodegradation by Gordonia sp. strain J1A and discovery of an oxygenase involved in its degradation
2025 | Chiba | Applied and Industrial Microbiology | Link
Winter Temperature Affects Fatty Acid Composition and Gene Expression, but Not Fat Content and Survival in a Northern Population of a Range-Expanding Spider
2025 | Ortiz-movliav | Ecology and Evolution | Link
Variant-specific interaction of kinectin 1 with the multi-tRNA synthetase complex regulates ER sheet organization
2025 | Hasogane | iScience | Link
The efficacy and accuracy of ribosomal RNA depletion methods in the parasitic nematode Strongyloides ratti
2025 | Ahmed | Molecular and Biochemical Parasitology | Link
Integrated genomic and transcriptomic Insights into methanol tolerance mechanisms in Methylobacterium extorquens AM1, identifying key targets for strain engineering
2025 | Lee | Journal of Biological Engineering | Link
Divergent transcriptional regulation of redox-homeostasis and permeability modulate rifampicin tolerance and sensitivity in Mycobacterium tuberculosis
2025 | Sebastian | Nature Communications | Link
Gdx mediates low-affinity Cs⁺/H⁺ antiport and confers cesium resistance in Escherichia coli
2025 | Kojima | Engineering Microbiology | Link
Comparative genomic segmental abundance of southern rice black-streaked dwarf virus in rice and weeds reveals host-dependent accumulation and variation post first outbreak in India
2025 | Prajapati | Journal of Agriculture and Food Research | Link
Peach viromics unveils it to be new host of grapevine red globe virus, citrus sudden death-associated virus, grapevine asteroid mosaic-associated virus and a novel marafivirus
2025 | Diksha | Journal of Plant Pathology | Link
RNA-binding protein YebC enhances translation of proline-rich amino acid stretches in bacteria
2025 | Ignatov | Nature Communications | Link
Binding of heterochromatin protein Rhino to a subset of piRNA clusters depends on a combination of two histone marks
2025 | Akkouche | Nature Structural and Molecular Biology | Link
Seasonal transcriptomic shifts reveal metabolic flexibility of chemosynthetic symbionts in an upwelling region
2025 | Morel-letelier | mSystems | Link
m6A modification is incorporated into bacterial mRNA without specific functional benefit
2025 | Szydlo | Nucleic Acids Research | Link
R-loop control and mitochondrial genome stability require the 5′-3′ exonuclease/flap endonuclease OEX1
2025 | Schatz | The Plant Cell | Link
Regulation of translation elongation and integrated stress response in heat-shocked neurons
2025 | Seluzicki | Cell Reports | Link
Disruption-induced changes in syntrophic propionate and acetate oxidation: flocculation, cell proximity, and microbial activity
2025 | Weng | Biotechnology for Biofuels and Bioproducts | Link
Group A Streptococcal asparagine metabolism regulates bacterial virulence
2025 | Sharma | EMBO reports | Link
Exploring biodegradation limits of n-alkanes as polyethylene models using multi-omics approaches
2025 | Suzuki | Science of The Total Environment | Link
An unusual glycerol-3-phosphate dehydrogenase in Sulfolobus acidocaldarius elucidates the diversity of glycerol metabolism across Archaea
2025 | Schmerling | Communications Biology
Metagenome-Assembled Genomes and Metatranscriptome Analysis of Perfluorooctane Sulfonate-Reducing Bacteria Enriched From Activated Sludge
2025 | Sorn | Environmental Microbiology | Link
Direct RNA sequencing of the Escherichia coli epitranscriptome uncovers alterations under heat stress
2025 | Riquelme-barrios | Nucleic Acids Research | Link
Gene-specific transcript buffering revealed by perturbation of coactivator complexes
2025 | Forouzanfar | Science Advances | Link
The translational landscape of HIV-1 infected cells reveals key gene regulatory principles
2025 | Kibe | Nature Structural and Molecular Biology
Deep learning to decode sites of RNA translation in normal and cancerous tissues
2025 | Clauwaert | Nature Communications
Transcriptional regulation of the piRNA pathway by Ovo in animal ovarian germ cells
2025 | Alizada | Genes Dev
Selection of initiator tRNA and start codon by mammalian mitochondrial initiation factor 3 in leaderless mRNA translation
2025 | Lee | Nucleic Acids Research
Biosensor-guided evolution boosts itaconic acid production, unveiling unique insights into the stringent response
2025 | Moon | Bioresource Technology | Link
RACK1 MARylation regulates translation and stress granules in ovarian cancer cells
2025 | Challa | Journal of Cell Biology
Discovery of novel sugarcane totivirus 1 from Saccharum officinarum by high-throughput sequencing
2025 | Srivastava | Molecular Biology Reports
Methanol transfer supports metabolic syntrophy between bacteria and archaea
2025 | Huang | Nature | Link
Crucial roles of Grr1 in splicing and translation of HAC1 mRNA upon unfolded stress response
2025 | Sato | Nature Communications | Link
Betaproteobacterial clade II nosZ activated under high N2O concentrations in paddy soil microcosms
2025 | Mise | Journal of Applied Microbiology | Link
Xanthine oxidase-lactoperoxidase system: Dose-dependent antibacterial effects and global gene expression changes in infant oral microbiota
2025 | Gadegaard | Food Research International
Transcriptomic Profiling of Plasma Extracellular Vesicles Enables Reliable Annotation of the Cancer-specific Transcriptome and Molecular Subtype
2024 | Bahrambeigi | Cancer Research | Link
Translation of non-canonical open reading frames as a cancer cell survival mechanism in childhood medulloblastoma
2024 | Hofman | Molecular Cell | Link
Conserved 5- methyluridine tRNA modification modulates ribosome translocation
2024 | Jones | PNAS | Link
Perturbation-specific transcriptional mapping for unbiased target elucidation of antibiotics
2024 | Romano | PNAS | Link
An Optimized Method for Reconstruction of Transcriptional Regulatory Networks in Bacteria Using ChIP-exo and RNA-seq Datasets
2024 | Jang | Journal of Microbiology
Native RNA nanopore sequencing reveals antibiotic-induced loss of rRNA modifications in the A- and P-sites
2024 | Delgado-tejedor | Nature Communications
RNA stability is regulated by both RNA polyadenylation and ATP levels, linking RNA and energy metabolisms in Escherichia coli
2024 | Roux | mBio
The early transcriptional and post-transcriptional responses to fluconazole in sensitive and resistant Candida albicans
2024 | Stevens | Scientific Reports | Link
Uncovering the small proteome of Methanosarcina mazei using Ribo-seq and peptidomics under different nitrogen conditions
2024 | Aammar tufail | Nature Communications | Link
Genetically stable kill-switch using demon and angel expression construct of essential genes
2024 | Kato | Frontiers in Bioengineering and Biotechnology
Efficient suppression of premature termination codons with alanine by engineered chimeric pyrrolysine tRNAs
2024 | Awawdeh | Nucleic Acids Research | Link
Comprehensive virome profiling of sugarcane and simplified duplex OneStep RT-PCR assay reveals the prevalence of sugarcane streak mosaic virus along with sugarcane yellow leaf virus in India
2024 | Srivastava | Journal of Genetic Engineering and Biotechnology | Link
Rewiring of RNA methylation by the oncometabolite fumarate in renal cell carcinoma
2024 | Fitzsimmons | NAR Cancer
IGF2BP1 phosphorylation in the disordered linkers regulates ribonucleoprotein condensate formation and RNA metabolism
2024 | Hornegger | Nature Communications | Link
Unveiling the novel regulatory roles of RpoD-family sigma factors in Salmonella Typhimurium heat shock response through systems biology approaches
2024 | Park | PLOS Genetics | Link
Uncovering the small proteome of Methanosarcina mazei using Ribo-seq and peptidomics under different nitrogen conditions
2024 | Tufail | Nature Communications | Link
Impact of nutrient excess on physiology and metabolism of Sulfolobus acidocaldarius
2024 | Sedlmayr | Frontiers in Microbiology | Link
Assessing the de novo assemblers: a metaviromic study of apple and first report of citrus concave gum-associated virus, apple rubbery wood virus 1 and 2 infecting apple in India
2024 | Khan | BMC Genomics | Link
The RNA landscape of the human commensal Segatella copri reveals a small RNA essential for gut colonization
2024 | El mouali | Cell Host & Microbe | Link
The Neo-Open Reading Frame Peptides That Comprise the Tumor Framome Are a Rich Source of Neoantigens for Cancer Immunotherapy
2024 | Martin | Cancer Immunology Research | Link
Understanding the dissemination of viruses and viroids identified through virome analysis of major grapevine rootstocks and RPA-based detection of prevalent grapevine virus B
2024 | Thapa | Scientia Horticulturae | Link
piRNA generation is associated with the pioneer round of translation in stem cells
2024 | Parambil | Nucleic Acids Research | Link
Comprehensive map of ribosomal 2′-O-methylation and C/D box snoRNAs in Drosophila melanogaster
2024 | Sklias | Nucleic Acids Research | Link
A kinetic dichotomy between mitochondrial and nuclear gene expression processes
2024 | Mcshane | Molecular Cell | Link
Universal microbial reworking of dissolved organic matter along environmental gradients
2024 | Freeman | Nature Communications | Link
Translation variation across genetic backgrounds reveals a post-transcriptional buffering signature in yeast
2024 | Teyssonniere | Nucleic Acids Research | Link
RNA-sequencing of paired tape-strips and skin biopsies in atopic dermatitis reveals key differences
2024 | Fritz | Allergy | Link
Mettl1-dependent m7G tRNA modification is essential for maintaining spermatogenesis and fertility in Drosophila melanogaster
2024 | Kaneko | Nature Communications | Link
Alternative translation initiation produces synaptic organizer proteoforms with distinct localization and functions
2024 | Lee | Molecular Cell | Link
A mycofactocin-associated dehydrogenase is essential for ethylene glycol metabolism by Rhodococcus jostii RHA1
2024 | Shimizu | Environmental Biotechnology | Link
Erythritol alters phosphotransferase gene expression and inhibits the in vitro growth of Staphylococcus coagulans isolated from canines with pyoderma
2024 | Onishi-sakamoto | Frontiers in Veterinary Science | Link
Systematic identification of post-transcriptional regulatory modules
2024 | M khoroshkin | Nature Communications | Link
mRNA cap-binding protein eIF4E1 is a novel regulator of Toxoplasma gondii latency
2024 | Holmes | mBio
Translational Regulation of Duplicated Gene Expression Evolution in Allopolyploid Cotton
2024 | Fu | Genes | Link
Dynamics of diversified A-to-I editing in Streptococcus pyogenes is governed by changes in mRNA stability
2024 | Wulff | Nucleic Acids Research | Link
Current limitations in predicting mRNA translation with deep learning models
2024 | Schlusser | Genome Biology | Link
Methyltransferase ATMETTL5 writes m6A on 18S ribosomal RNA to regulate translation in Arabidopsis
2024 | Song | New Phytologist | Link
Uridylation regulates mRNA decay directionality in fission yeast
2024 | Grochowski | Nature Communications | Link
Vaginal Lactobacillus fatty acid response mechanisms reveal a metabolite-targeted strategy for bacterial vaginosis treatment
2024 | Zhu | Cell | Link
Optimization of ribosome profiling in plants including structural analysis of rRNA fragments
2024 | Ting | Plant Methods | Link
Calibrated ribosome profiling assesses the dynamics of ribosomal flux on transcripts
2024 | Tomuro | Nature Communications | Link
m3C32 tRNA modification controls serine codon-biased mRNA translation, cell cycle, and DNA-damage response
2024 | Cui | Nature Communications
Detection of novel orthoparamyxoviruses, orthonairoviruses and an orthohepevirus in European white-toothed shrews
2024 | Haring | Microbial Genomics | Link
Transcriptome Analysis of Sake Yeast in Co-Culture with kuratsuki Kocuria
2024 | Kobayashi | MDPI Fermentation | Link
OsALKBH9-mediated m6 A demethylation regulates tapetal PCD and pollen exine accumulation in rice
2024 | Tang | Plant Biotechnology Journal | Link
Transcriptomic profiling of haloarchaeal denitrification through RNA-Seq analysis
2024 | Miralles-robledillo | Applied and Environmental Microbiology | Link
Widespread alterations in systemic immune profile are linked to lung function heterogeneity and airway microbes in cystic fibrosis
2024 | Rosii | Journal of Cystic Fibrosis | Link
Algal methylated compounds shorten the lag phase of Phaeobacter inhibens bacteria
2024 | Sperfeld | Nature Microbiology | Link
Selective gene expression maintains human tRNA anticodon pools during differentiation
2024 | Gao | Nature cell biology | Link
An expanded transcriptome atlas for Bacteroides thetaiotaomicron reveals a small RNA that modulates tetracycline sensitivity
2024 | Ryan | Nature Microbiology | Link
Inhibition of mevalonate pathway by macrophage-specific delivery of atorvastatin prevents their pro-inflammatory polarisation
2024 | Krejcova | Insect Molecular Biology | Link
Chp1 is a dedicated chaperone at the ribosome that safeguards eEF1A biogenesis
2024 | Minoia | Nature Communications | Link
Cbp1 and Cren7 form chromatin-like structures that ensure efficient transcription of long CRISPR arrays
2024 | Blombach | Nature Communications | Link
Molecular and Serological Detection of Bovine Coronaviruses in Marmots (Marmota marmota) in the Alpine Region
2024 | Moreno | MDPI Viruses | Link
Biosynthesis and differential spatial distribution of the 3‐deoxyanthocyanidins apigenidin and luteolinidin at the interface of a plant‐cyanobacteria symbiosis exposed to cold
2024 | Gungor | Plant, Cell & Environment | Link
TbsP and TrmB jointly regulate gapII to influence cell development phenotypes in the archaeon Haloferax volcanii
2024 | Hackley | Molecular Microbiology | Link
PABP-driven secondary condensed phase within RSV inclusion bodies activates viral mRNAs for ribosomal recruitment
2024 | Zhang | Virologica Sinica | Link
Impact of eIF2a phosphorylation on the translational landscape of mouse embryonic stem cells
2024 | Amiri | Cell Reports | Link
Genome analysis of viruses of Phenuiviridae, Betaflexiviridae and Bromoviridae, and apple scar skin viroid in pear by high-throughput sequencing revealing host expansion of a rubodvirus and an ilarvirus
2024 | Khan | Physiological and Molecular Plant Pathology | Link
Synonymous codon usage regulates translation initiation
2023 | Barrington | Cell Reports | Link
Comparative analysis of nascent RNA sequencing methods and their applications in studies of cotranscriptional splicing dynamics
2023 | Liu | The Plant Cell | Link
Histone H1 regulates non-coding RNA turnover on chromatin in a m6A-dependent manner
2023 | Fernandez-justel | Cell Reports | Link
Human mRNA in saliva can correctly identify individuals harboring acute infection
2023 | Yang | mBio | Link
Growth of the Nitrosomonas europaea cells in the biofilm and planktonic growth mode: Responses of extracellular polymeric substances production and transcriptome
2023 | Oshiki | Journal of Bioscience and Bioengineering | Link
Uncovering the temporal dynamics and regulatory networks of thermal stress response in a hyperthermophile using transcriptomics and proteomics
2023 | Gruenberger | mBio | Link
Methylated guanosine and uridine modifications in S. cerevisiae mRNAs modulate translation elongation
2023 | Jones | RSC Chemical Biology | Link
Paf1 complex subunit Rtf1 stimulates H2B ubiquitylation by interacting with the highly conserved N-terminal helix of Rad6
2023 | Fetian | PNAS | Link
Human mRNA in saliva can correctly identify individuals harboring acute infection
2023 | Yang | Host-Microbial Interactions | Link
Functioning of a tripartite lignocellulolytic microbial consortium cultivated under two shaking conditions: a metatranscriptomic study
2023 | Wang | Biotechnology for Biofuels and Bioproducts | Link
Bacteria use a catabolic patchwork pathway of apparently recent origin for degradation of the synthetic buffer compound TRIS
2023 | Holert | The ISME Journal | Link
A conserved transcription factor controls gluconeogenesis via distinct targets in hypersaline-adapted archaea with diverse metabolic capabilities
2023 | Hackley | PLOS Genetics | Link
Overexpression of polyphosphate polymerases and deletion of polyphosphate phosphatases shorten the replicative lifespan in yeast
2023 | Umeda | FEBS Letters | Link
Nuclear mRNPs are compact particles packaged with a network of proteins promoting RNARNA interactions
2023 | Bonneau | Genes Dev | Link
Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus
2023 | Van lopik | Nature Communications | Link
Stress-induced nuclear speckle reorganization is linked to activation of immediate early gene splicing
2023 | Sung | Journal of Cell Biology | Link
Revealing the small proteome of Haloferax volcanii by combining ribosome profiling and small-protein optimized mass spectrometry
2023 | Hadjeras | microLife | Link
Aerobic bacteria produce nitric oxide via denitrification and promote algal population collapse
2023 | Abada | The ISME Journal | Link
Characterization of an archaeal virus-host system reveals massive genomic rearrangements in a laboratory strain
2023 | Mercier | Frontiers in Microbiology | Link
Syntrophic entanglements for propionate and acetate oxidation under thermophilic and high-ammonia conditions
2023 | Singh | The ISME Journal | Link
Central Role of Sibling Small RNAs NgncR_162 and NgncR_163 in Main Metabolic Pathways of Neisseria gonorrhoeae
2023 | Steiner | mBio | Link
ROS-induced ribosome impairment underlies ZAKα-mediated metabolic decline in obesity and aging
2023 | Snieckute | Science | Link
Macrophage‐derived insulin antagonist ImpL2 induces lipoprotein mobilization upon bacterial infection
2023 | Krejcova | EMBO | Link
Acclimation of Nodularia spumigena CCY9414 to inorganic phosphate limitation - Identification of the P-limitation stimulon via RNA-seq
2023 | Santoro | Frontiers in Microbiology | Link
Rational design of alcoholic fermentation targeting extracellular carbon
2023 | Watanabe | npj Science of Food | Link
Battle for control of anthocyanin biosynthesis in two Brassicaceae species infected with turnip mosaic virus
2023 | Inukai | Journal of Experimental Botany | Link
Integrated workflow for discovery of microprotein-coding small open reading frames
2023 | Cao | STAR Protocols | Link
Depletion of tRNA CCA-adding enzyme in Mycobacterium tuberculosis leads to polyadenylation of transcripts and precursor tRNAs
2023 | Blaszczyk | Scientific Reports | Link
RNF14-dependent atypical ubiquitylation promotes translation-coupled resolution of RNA-protein crosslinks
2023 | Zhao | Molecular Cell | Link
Mystery of fatal 'staggering disease' unravelled: novel rustrela virus causes severe meningoencephalomyelitis in domestic cats
2023 | Matiasek | Nature Communications | Link
Differential regulation of mRNA stability modulates transcriptional memory and facilitates environmental adaptation
2023 | Li | Nature Communications | Link
Unraveling the small proteome of the plant symbiont Sinorhizobium meliloti by ribosome profiling and proteogenomics
2023 | Hadjeras | uLife | Link
Identification of D-arabinan-degrading enzymes in mycobacteria
2023 | Al-jourani | Nature Communications | Link
Mechanisms of readthrough mitigation reveal principles of GCN1-mediated translational quality control
2023 | Mueller | Cell | Link
Transcriptome profiling of Nudix hydrolase gene deletions in the thermoacidophilic archaeon Sulfolobus acidocaldarius
2023 | Breuer | Frontiers in Microbiology | Link
Exploring engineered vesiculation by Pseudomonas putida KT2440 for natural product biosynthesis
2023 | Bitzenhofer | Microbial Biotechnology | Link
Benzene Amide Ether Scaffold is Active against Non-replicating and Intracellular Mycobacterium tuberculosis
2023 | Ahmed | ACS Infectious Diseases | Link
Coupling of co-transcriptional splicing and 3 end Pol II pausing during termination in Arabidopsis
2023 | Zhou | Genome Biology | Link
Macrophage-derived insulin antagonist ImpL2 induces lipoprotein mobilization uponbacterial infection
2023 | Krejcova | EMBO | Link
Systematic discovery of neoepitopeHLA pairs for neoantigens shared among patients and tumor types
2023 | Gurung | Nature Biotech | Link
The DEAD-box RNA helicase RhlB is required for efficient RNA processing at low temperature in Caulobacter
2023 | de Araujo | Microbiology Spectrum | Link
Comparison of rRNA depletion methods for efficient bacterial mRNA sequencing
2022 | Wahl | Scientific Reports | Link
The carnitine degradation pathway of Acinetobacter baumannii and its role in virulence
2022 | Breisch | Environmental Microbiology | Link
Ribotype-dependent growth inhibition and promotion by erythritol in Cutibacterium acnes
2022 | Fujii | Journal of Cosmetic Dermatology | Link
The novel protein ScrA acts through the SaeRS two-component system to regulate virulence gene expression in Staphylococcus aureus
2022 | Wittekind | Molecular Microbiology | Link
Mechanisms behind the varying severity of Aleutian mink disease virus: Comparison of three farms with a different disease status
2022 | Virtanen | Veterinary Microbiology | Link
Global transcriptional and circadian regulation in a halotolerant cyanobacterium Halothece sp. PCC7418
2022 | Waditee-sirisattha | Scientific Reports | Link
Sex-specific variation in R-loop formation in Drosophila melanogaster
2022 | Stanek | PLOS Genetics | Link
A simple and robust method for isolating and analyzing chromatin-bound RNAs in Arabidopsis
2022 | Zhang | Plant Methods | Link
Opportunities and Challenges to Profile mRNA Modifications in Escherichia coli
2022 | Petrov | ChemBioChem | Link
Sensing of individual stalled 80S ribosomes by Fap1 for nonfunctional rRNA turnover
2022 | Li | Molecular Cell | Link
Metatranscriptomics of cheese microbial communities: Efficiency of RNA extraction from various cheese types and of mRNA enrichment
2022 | Carbonne | International Journal of Food Microbiology | Link
An atlas of plant full-length RNA reveals tissue-specific and monocotsdicots conserved regulation of poly (A) tail length
2022 | Jia | Nature Plants | Link
Multi-site fungicides suppress banana Panama disease, caused by Fusarium oxysporum f. sp. cubense Tropical Race 4
2022 | Cannon | Plos Pathogens | Link
Characterization of an Entner-Doudoroff pathway-activated Escherichia coli
2022 | Kim | BMC Biotechnology for Biofuels and Bioproducts | Link
Translational readthrough of nonsense mutant TP53 by mRNA incorporation of 5-Fluorouridine
2022 | Palomar-Siles | Cell Death and Diseases | Link
Y RNAs are conserved endogenous RIG-I ligands across RNA virus infection and are targeted by HIV-1
2022 | Vabret | iScience | Link
Nanopore sequencing of RNA and cDNA molecules in Escherichia coli
2022 | Gruenberger | RNA | Link
Molecular Connectivity between Extracytoplasmic Sigma Factors and PhoP Accounts for Coupled Mycobacterial Stress Response
2022 | Goar | Journal of Bacteriology | Link
Comparative Analysis of rRNA Removal Methods for RNA-Seq Differential Expression in Halophilic Archaea
2022 | Martinez-Pastor | MDPI Biomolecules | Link
Disentangling the lipid divide: Identification of key enzymes for the biosynthesis of membrane-spanning and ether lipids in Bacteria
2022 | Sahonero-Canavesi | Science Advances | Link
Systematic identification of molecular mediators of interspecies sensing in a community of two frequently coinfecting bacterial pathogens
2022 | Zarrella | PLOS Biology | Link
Transcriptomic fingerprint of bacterial infection in lower extremity ulcers
2022 | Blaine | Journal of Pathology, Microbiology and Immunology | Link
Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing
2022 | Begik | Nature Methods | Link
Isolation of a virus causing a chronic infection in the archaeal model organism Haloferax volcanii reveals antiviral activities of a provirus
2022 | Alarcon-Schumacher | PNAS | Link
Non-target RNA depletion strategy to improve sensitivity of next-generation sequencing for the detection of RNA viruses in poultry
2022 | Parris | Journal of Veterinary Diagnostic Investigation | Link
The Mammalian Cap-Specific m6Am RNA Methyltransferase PCIF1 Regulates Transcript Levels in Mouse Tissues
2022 | Pandey | Cell Reports | Link
Enhancer transcription detected in the nascent transcriptomic landscape of bread wheat
2022 | Xie | Genome Biology | Link
Dual functioning by the PhoR sensor is a key determinant to Mycobacterium tuberculosis virulence
2021 | Singh | PLOS Genetics | Link
A Cas12a-based CRISPR interference system for multigene regulation in mycobacteria
2021 | Fleck | Journal of Biological Chemistry | Link
Compensatory evolution of Pseudomonas aeruginosas slow growth phenotype suggests mechanisms of adaptation in cystic fibrosis
2021 | La rosa | Nature Communications | Link
A versatile genetic toolbox for Prevotella copri enables studying polysaccharide utilization systems
2021 | Li | EMBO | Link
Landscape of transcription termination in Arabidopsis revealed by single-molecule nascent RNA sequencing
2021 | Mo | Genome Biology | Link
Revealing nascent RNA processing dynamics with nano-COP
2021 | Drexler | Nature Protocols | Link
Neuronal Nsun2 deficiency produces tRNA epitranscriptomic alterations and proteomic shifts impacting synaptic signaling and behavior
2021 | Blaze | Nature Communications | Link
Cotranscriptional and Posttranscriptional Features of the Transcriptome in Soybean Shoot Apex and Leaf
2021 | Zhu | Frontiers in Plant Science | Link
Enhanced production of nonanedioic acid from nonanoic acid by engineered Escherichia coli
2021 | Lee | Biotechnology Journal | Link
Experimental and Computational Workflow for RNA Sequencing in Mycobacterium tuberculosis : From Total RNA to Differentially Expressed Genes
2021 | Ma | Mycobacteria Protocols | Link
Quasi-essentiality of RNase Y in Bacillus subtilis is caused by its critical role in the control of mRNA homeostasis
2021 | Benda | Nucleic Acids Research | Link
Cysteine: an overlooked energy and carbon source
2021 | Goebbels | Scientific Reports | Link
Chromosome-level genome assembly and transcriptome-based annotation of the oleaginous yeast Rhodotorula toruloides CBS 14
2021 | Martin-hernandez | Genomics | Link
Identification of small molecules that interfere with c-di-GMP signaling and induce dispersal of Pseudomonas aeruginosa biofilms
2021 | Andersen | Npj biofilms and microbiomes | Link
Discerning the role of a functional arsenic-resistance cassette in the evolution and adaptation of a rice pathogen
2021 | Kaur | Microbial Genomics | Link
Towards the characterization of the hidden world of small proteins in Staphylococcus aureus, a proteogenomics approach
2021 | Fuchs | PLOS Genetics | Link
smORFer: a modular algorithm to detect small ORFs in prokaryotes.
2021 | Bartholomaus | Nucleic Acids Research | Link
The de novo Purine Biosynthesis Pathway Is the Only Commonly Regulated Cellular Pathway during Biofilm Formation in TSB-Based Medium in Staphylococcus aureus and Enterococcus faecalis
2021 | Gelinas | Microbiology Spectrum | Link
Channel nuclear pore complex subunits are required for transposon silencing in Drosophila
2021 | Munafo | eLife | Link
FLEP-seq simultaneous detection of RNA polymerase II position, splicing status, polyadenylation site and poly(A) tail length at genome-wide scale by single-molecule nascent RNA sequencing
2021 | Long | Nature Protocols | Link
A transposon expression burst accompanies the activation of Y-chromosome fertility genes during Drosophila spermatogenesis
2021 | Lawlor | Nature Communications | Link
A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence
2020 | Venturini | microLife | Link
A high-resolution transcriptome map identifies small RNA regulation of metabolism in the gut microbe Bacteroides thetaiotaomicron
2020 | Ryan | Nature Communications | Link
Bifidobacterium infantis Metabolizes 2′Fucosyllactose-Derived and Free Fucose Through a Common Catabolic Pathway Resulting in 1,2-Propanediol Secretion
2020 | Dedon | Frontiers in Nutrition | Link
Coxiella burnetii replicates in Galleria mellonella hemocytes and transcriptome mapping reveals in vivo regulated genes
2020 | Kovacs-simon | Virulence | Link
Phenotypic and Transcriptomic Analyses of Seven Clinical Stenotrophomonas maltophilia Isolates Identify a Small Set of Shared and Commonly Regulated Genes Involved in the Biofilm Lifestyle
2020 | Alio | Applied and Environmental Microbiology | Link
Deconstructing and Reconstructing Cheese Rind Microbiomes for Experiments in Microbial Ecology and Evolution
2019 | Cosetta | Current Protocols in Microbiology | Link