Pan-Plant riboPOOL

The Pan-Plant riboPOOL is designed to efficiently deplete ribosomal RNA (rRNA) from plants RNA samples. The product is compatible with most downstream applications, including different next generation sequencing workflows (both short and long-read sequencing).

The Pan-Plant riboPOOL is optimized for high-quality and intact (RIN > 7) RNA samples.

 

The Pan-Plant riboPOOL covers the following sequences:

Sequence Type Covered
28S rRNA Cytosolic Yes
18S  rRNA Cytosolic Yes
5.8S rRNA Cytosolic Yes
5S rRNA Cytosolic Yes
26S rRNA Mitochondrial Yes
18S rRNA Mitochondrial Yes
5S rRNA Mitochondrial Yes
23S rRNA Plastid Yes
16S rRNA Plastid Yes
5S rRNA Plastid Yes
4.5S rRNA Plastid Yes

 

Plants play pivotal roles in ecosystems, providing oxygen, food, shelter, and contributing to the balance of various natural processes. RNA-Seq in plants facilitates the comparison of gene expression between different plant tissues, developmental stages, and various conditions, such as stress, disease, or different environmental stimuli. Prominent plant model organisms include Arabidopsis thaliana, Oryza sativa, and others.

Benefits

  • Enzyme-free, fast & easy workflow
  • Compatible with most downstream applications
  • Wide range of input RNA amounts
  • Possibility of combining with other riboPOOLs
  • Compatible with lab automated workflows

Pan-Plant Taxonomic Coverage

The Pan-Plant riboPOOL is designed for efficient ribodepletion in plants. Pan-Plant riboPOOL probes have been mapped against rRNA sequences of more than 100 plant species to ensure uniform coverage across the taxon.

Would you like to know how well the Pan-plant riboPOOL covers your plant species of interest? Contact us for a free bioinformatic coverage assessment. Click here for more information on how our Pan-riboPOOLs are designed.

Available Formats

riboPOOLs kits with cleanUP module

riboPOOL Probes Only